How to Cross-Pollinate Chilli Plants

Crossing chilli plants is a fun (and surprisingly simple) way to create your own new chilli varieties. Here’s a quick how to guide on how it’s done.

Bishop’s Crown (Capsicum baccatum)
Bishop’s Crown (Capsicum baccatum)
  1. Choose Your Parent Plants:
    • Pick two healthy plants you want to cross — one will be the “mother” (the plant that will produce the seed) and one the “father” (the pollen donor).
    • Ideally, they should be flowering at the same time.
  2. Prepare the “Mother” Flower:
    • Select a fresh flower bud on the mother plant just before it opens.
    • Carefully remove the flower’s anthers (the parts that produce pollen) using tweezers or small scissors — this prevents it from self-pollinating.
      (This is called emasculation.)
  3. Collect Pollen from the “Father”:
    • Find an open flower on the father plant.
    • Gently rub a small paintbrush, toothpick, or even a cotton swab over the anthers to collect pollen.
  4. Pollinate the Mother Flower:
    • Lightly brush the collected pollen onto the stigma (the sticky part in the center) of the prepared mother flower.
  5. Protect the Cross:
    • To avoid accidental pollination by insects, you can bag the pollinated flower with a small mesh bag or a piece of breathable fabric.
  6. Mark Your Cross:
    • Tag the branch or flower with a label — write down which parents were crossed (e.g., “Jalapeño × Habanero”) and the date.
  7. Wait for Fruit:
    • If successful, the flower will turn into a fruit. When the pepper ripens, you can harvest the seeds — they will carry the new genetic mix!
  8. Grow Out the Seeds:
    • Sow the seeds from your cross. The first generation (F1) will have traits from both parents.
    • Later generations (F2, F3) are needed to stabilize if you want a consistent new variety.

Important tips:

  • Some crosses are easier than others — Capsicum chinense crosses tend to be more delicate.
  • For easier success, start to cross within the same species (e.g., Capsicum annuum × Capsicum annuum) .
  • Use clean tools to avoid contamination.

Special Tips for Crossing Capsicum annuum × Capsicum chinense:

  • This cross can be more challenging because they are different species, but it’s definitely possible!
  • Choose vigorous, healthy parent plants to increase the chances.
  • Perform emasculation very carefully: C. chinense flowers are smaller and more delicate.
  • Pollinate early in the morning when flowers are most receptive.
  • You might need to try multiple pollinations on several flowers to get a successful fruit.
  • Be patient: sometimes only a few seeds are viable from this type of cross.

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